stem cells in their environment

team >

shahnawaz ali




Research Associate


  • PhD in Computational Biology, Jamia Millia Islamia, India
  • M.Sc. in Bioinformatics, Jamia Millia Islamia, India

research project title

'Application of deep learning to understand the rules associated with cellular heterogeneity.'

core expertise

  • Bioinformatics
  • Computational biology
  • Machine learning


[Full PubMed list]

  • ‘Exploring novel key regulators in breast cancer network’. Ali S, Malik MZ, Singh SS, Chirom K, Ishrat R, Singh RB. PloS one. 2018;13(6); e0198525.
  • ‘Assessment of the key regulatory genes and their Interologs for Turner Syndrome employing network approach.’ Farooqui A, Tazyeen S, Ahmed MM, Alam A, Ali S, Malik MZ, Ali S, Ishrat R. Scientific reports, 2018; 8(1); 10091.
  • ‘Stage specific classification of DEGs via statistical profiling and network analysis reveals potential biomarker associated with various stages of TB.’ Alam A, Imam N, Ahmed MM, Tazyeen S, Farooqui A, Ali S, Malik MZ, Ishrat R. bioRxiv. 2018; 414110.
  • ‘Pharmacokinetic and Molecular Docking Studies of Plant-Derived Natural Compounds to Exploring Potential Anti-Alzheimer Activity. In In Silico Approach for Sustainable Agriculture .’ Alam A, Tamkeen N, Imam N, Farooqui A, Ahmed MM, Tazyeen S, Ali S, Malik MZ, Ishrat R. Springer, Singapore. 2018; 217-238.
  • ‘In Silico Biochemical Pathways for Bacterial Metabolite Synthesis. In: Choudhary D., Kumar M., Prasad R., Kumar V. (eds) In Silico Approach for Sustainable Agriculture.’ Ali M, Ali S, Ishrat R. Springer, Singapore. 2018; 239-250; ISBN 978-981-13-0347-0
  • ‘Recent trends in ZikV research: a step away from cure.’ Alam A, Imam N, Ali S, Malik MZ, Ishrat R.  Biomedicine & Pharmacotherapy. 2017;91;1152-1159.
  • ‘Dynamical states, possibilities and propagation of stress signal.’ Malik MZ, Ali S, Singh SS, Ishrat R, Singh RB. Scientific Reports. 2017;7.
  • ‘Identification of Inference Genes in Breast Cancer Network.’ Chirom K, Ali S, Malik MZ, Ishrat R,Singh RB. Journal of Biosciences and Medicines. 2017;5(09);29.
  • ‘From ZikV genome to vaccine: in silico approach for the epitope-based peptide vaccine against Zika virus envelope glycoprotein.’ Alam A, Ali S, Ahamad S, Malik M, Ishrat R. Immunology. 2016; 149(4); 386-399.
  • ‘Dynamics of p53 and Wnt cross talk.’ Malik M Z, Ali S, Alam M J, Ishrat R, Singh RB. Computational biology and chemistry. 2015; 59; 55-66.
  • ‘A comparative molecular dynamics study of MurA enzymes from E. coli and M. tuberculosis.’ Ahamad S, Khan F, Bajpai U, Ali S, Dwivedi N, Hassan Md.  Innovations in Pharmaceuticals and Pharmacotherapy. 2015.
  • ‘Molecular interaction of cationic gemini surfactant with bovine serum albumin: A spectroscopic and molecular docking study.’ Mir MUH, Maurya JK, Ali S, Ubaid-Ullah S, Khan AB, Patel R. Process Biochemistry. 2104; 49(4); 623-630.
  • ‘Evolutionary trace analysis of p53 protein: A statistical analysis of conserved amino acids in p53 protein.’ Ali S, Malik M, Alam M, Ishrat R, Singh RK. Journal of Bioinformatics and Intelligent Control. 2014; 3(3); 194-201.
  • ‘Intercellular Synchronization of Coupled Smooth Muscle Cells via Ca2+ Propagation.’ Malik M, Ali S, Alam M, Devi GR, Ishrat R, Singh RK. Journal of nanoscience and nanotechnology. 2012; 12(11); 8303-8315.